Here are the replies I got back from co-workers. I am not sure if it will cover all you wanted
- Epidemics by Ottar Bjornstadt
- Modeling Infectious Diseases in Humans and Animals by Matt Keeling and Pejman Rohani
- Epidemics on Networks by Joel Miller
- An Introduction to Infectious Disease Modeling by Emilia Vynnycky
- https://www.coursera.org/lecture/epidemics/models-of-infectious-diseases-H4IpX
- https://www.coursera.org/lecture/global-health-overview/mathematical-modelling-for-understanding-and-predicting-communicable-diseases-by-rTUGr
- https://www.coursera.org/learn/hkuepidemics